NMR
ETH Zürich (Y.Nikolaev / F.Allain group)
Automatic analysis of NMR titrations
- NMR mapper (collaboration with Piotr Klukowski, Wrocław Uni Tech)
In-Vitro-Transcription NMR (IVTNMR) - RNA folding, transcription and RNA-protein interactions:
- Automated processing and analysis of IVTNMR datasets
- Algorithmic design of RNA abortive products
Metabolite-protein interactions
- Python-based setup and processing of NMR experiments
- MATLAB-based pipeline for analysis of interactions in ligand-detected NMR data
Modeling
Rule-Based network modeling
- BioNetGen - James Faeder lab
- RuleBender - G. Elisabeta Marai, iVRL lab
Model selection, parameterization and uncertainty analysis
- Data2Dynamics - Andreas Raue, Jens Timmer lab, University of Freiburg
- PottersWheel - Thomas Maiwald, Jens Timmer lab, University of Freiburg